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Marcelino LA, Backman V, Donaldson A, Steadman C, Thompson JR, Pacocha-Preheim S, Lien C, Lim E, Veneziano D, Polz MF.  2006.  Accurate identification of low abundant targets amidst similar sequences by revealing hidden correlations oligonucleotide microarray data. Proc. Natl. Acad. Sci. U S A. 103(37):13629-13634.
Joss MJ, Koenig J, Labbate M, Polz MF, Gillings MR, Stokes HW, Doolittle WF, Boucher Y.  2009.  ACID: annotation of cassette and integron data. BMC Bioinformatics. 10:118.
Hehemann J-H, Arevalo P, Datta MS, Yu X, Corzett CH, Henschel A, Preheim SP, Timberlake S, Alm EJ, Polz MF.  2016.  Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes.. Nat Commun. 7:12860.
Bertilsson SA, Polz MF.  2001.  Application of a diversity array to study specific substrate utilization in individual populations of heterotrophic bacteria. ASM 101st General Meeting.
Polz MF, Bertilsson S, Acinas SG, Hunt D.  2003.  A(r)Ray of hope in analysis of the function and diversity of microbial communities. Biol. Bull.. 204:196-199.
Takemura AF, Chien DM, Polz MF.  2014.  Associations and dynamics of Vibrionaceae in the environment, from the genus to the population level.. Front Microbiol. 5:38.
Fraser C, Alm EJ, Polz MF, Spratt BG, Hanage WP.  2009.  The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity. Science. 232(5915):741-746.
Hullar M, Polz MF, Cavanaugh CM.  1999.  Bias associated with reverse transcription of 16S rRNAs from microbial communities. ASM, 99th General Meeting.
Polz MF, Cavanaugh CM.  1998.  Bias in product-to-template ratios in multitemplate PCR. Appl. Environ. Microbiol.. 64(10):3724-3730.
Polz MF.  1991.  Charakterisierung von ektosymbiontischen Bakterien auf marinen, freilebenden Nematoden (Stilbonematinae).
Polz MF, Felbeck H, Novak R, Nebelsick M, Ott JA.  1992.  Chemoautotrophic, sulfur-oxidizing symbiotic bacteria on marine nematodes: morphological and biochemical characterization. Microb. Ecol.. 24:313-329.
Klepac-Ceraj V, Ceraj I, Polz MF.  2006.  CLUSTERER: extendable java application for sequence grouping and cluster analysis. Online J. Bioinf.. 7(1):15-21.
Stewart JR, Gast RJ, Fujioka RS, Solo-Gabriele HM, Meschke JS, Amaral-Zettler LA, Del Castillo E, Polz MF, Collier TK, Strom MS et al..  2008.  The coastal environment and human health: Microbial indicators, pathogens, sentinels and reservoirs. Environ. Health. 7:S3Suppl.2.
Ge Z, Feng Y, Taylor N, Ohtani M, Polz MF, Schauer DB, Fox JG.  2006.  Colonization of Altered Schaedler Flora is influenced by gender, aging and Helicobacter hepaticus infection in the intestine of Swiss Webster mice. Applied and Environmental Microbiology. 72(7):5100-5103.
Lim EL, Tomita AV, Thilly WG, Polz MF.  2001.  Combination of competitive quantitative PCR and constant denaturant capillary electrophoresis for high resolution detection and enumeration of microbial cells. Appl. Environ. Microbiol.. 67(9):3897-3903.
Jagtap, iv SSadash, Hehemann J-H, Polz MF, Lee J-K, Zhao H.  2014.  Comparative biochemical characterization of three exolytic oligoalginate lyases from vibrio splendidus reveals complementary substrate scope, temperature, and pH adaptations.. Appl Environ Microbiol. 80(14):4207-14.
Goudenège D, Labreuche Y, Krin E, Ansquer D, Mangenot S, Calteau A, Médigue C, Mazel D, Polz MF, Le Roux F.  2013.  Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits.. ISME J. 7(10):1985-96.
Yawata Y, Cordero OX, Menolascina F, Hehemann J-H, Polz MF, Stocker R.  2014.  Competition-dispersal tradeoff ecologically differentiates recently speciated marine bacterioplankton populations.. Proc Natl Acad Sci U S A. 111(15):5622-7.
Hunt DE, Gevers D, Vahora NM, Polz MF.  2008.  Conservation of the chitin utilization pathway in the Vibrionaceae. Applied and Environmental Microbiology. 74(1):44-51.
Sarma-Rupavtarm R, Ge Z, Schauer DB, Fox JG, Polz MF.  2003.  Defined flora mice as a model system for quantitatively studying the microecology of the mammalian gastrointesitnal tract. ASM General Meeting.
Acinas SG, Marcelino LA, Klepac-Ceraj V, Polz MF.  2004.  Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J. Bacteriol.. 186(9):2629-2635.
Thompson JR, Randa MA, Marcelino LA, Tomita A, Lim EL, Polz MF.  2004.  Diversity and dynamics of a North Atlantic coastal vibrio community. Appl. Environ. Microbiol.. 70(7):4103-4110.
Polz MF, Harbison C, Cavanaugh CM.  1999.  Diversity and heterogeneity of epibiotic bacterial communities on the marine nematode Eubostrichus dianae. Appl. Environ. Microbiol.. 65(9):4271-4275.
Man-Aharonovich D, Philosof A, Kirkup BC, Le Gall F, Yogev T, Berman-Frank I, Polz MF, Vaulot D, Beja O.  2010.  Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. ISME Journal. 4:1044–1052.
Thompson JR, Marcelino LA, Polz MF.  2005.  Diversity, sources, and detection of human bacterial pathogens in the marine environment. Oceans and Health: Pathogens in the Marine Environment. :29-68.
Wang L, Chen S, Vergin KL, Giovannoni SJ, Chan SW, DeMott MS, Taghizadeh K, Cordero OX, Cutler M, Timberlake S et al..  2011.  DNA phosphorothioation is widespread and quantized in bacterial genomes. Proceedings of the National Academy of Sciences of the United States of America. 108(7):2963-8.
Polz MF, Cavanaugh CM.  1995.  Dominance of one bacterial species at a Mid-Atlantic Ridge hydrothermal vent site. Proc. Natl. Acad. Sci. USA. 92:7232-7236.
Thompson JR, Polz MF.  2006.  Dynamics of Vibrio populations and their role in environmental nutrient cycling. The Biology of Vibrios. :190-203.
Xue H, Cordero OX, Camas FM, Trimble W, Meyer F, Guglielmini J, Rocha EPC, Polz MF.  2015.  Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations.. MBio. 6(3)
Cordero OX, Wildschutte H, Kirkup B, Proehl S, Ngo L, Hussain F, Le Roux F, Mincer T, Polz MF.  2012.  Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance.. Science. 337(6099):1228-31.
Polz MF, Cavanaugh CM.  1996.  The ecology of ectosymbiosis at a Mid-Atlantic Ridge hydrothermal vent site. Deep-sea and extreme shallow-water habitats: affinities and adaptations. 11:337-352.
Polz MF.  1997.  Ecology of epibiotic associations in the marine environment. Organismic and Evolutionary Biology. :167.
Randa MA, Polz MF, Lim E.  2004.  Effects of temperature and salinity of Vibrio vulnificus population dynamics as assessed by quantitative PCR. Appl. Environ. Microbiol.. 70(9):5469-5476.
Klose J, Polz MF, Wagner M, Schimak MP, Gollner S, Bright M.  2015.  Endosymbionts escape dead hydrothermal vent tubeworms to enrich the free-living population.. Proc Natl Acad Sci U S A. 112(36):11300-5.
Hunt DE, Klepac-Ceraj V, Acinas SG, Gauthier C, Bertilsson S, Polz MF.  2006.  Evaluation of 23S rRNA PCR Primers for use in Phylogenetic Studies of Bacterial Diversity. Appl. Environ. Microbiol.. 72(3):2221-2225.
Cordero OX, Polz MF.  2014.  Explaining microbial genomic diversity in light of evolutionary ecology.. Nat Rev Microbiol. 12(4):263-73.
Acinas SG, Klepac-Ceraj V, Hunt DE, Pharino C, Ceraj I, Distel DL, Polz MF.  2004.  Fine-scale phylogenetic architecture of a complex bacterial community. Nature. 430:551-554.
Le Roux F, Zouine M, Chakroun N, Binesse J, Saulnier D, Bouchier C, Zidane N, Ma L, Rusniok C, Lajus A et al..  2009.  Genome sequence of Vibrio splendidus: an abundant marine species with a large genotypic diversity. Environ. Microbiol.. 11(8):1959-1970.
Bongrand C, Koch EJ, Moriano-Gutierrez S, Cordero OX, McFall-Ngai M, Polz MF, Ruby EG.  2016.  A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior.. ISME J.
Thompson JR, Pacocha S, Pharino C, Klepac-Ceraj V, Hunt DE, Benoit J, Sarma-Rupavtarm R, Distel DL, Polz MF.  2005.  Genotypic diversity within a natural coastal bacterioplankton population. Science. 307(5713):1311-1313.