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Acinas SG, Klepac-Ceraj V, Hunt DE, Pharino C, Ceraj I, Distel DL, Polz MF.  2004.  Fine-scale phylogenetic architecture of a complex bacterial community. Nature. 430:551-554.
Acinas SG, Marcelino LA, Klepac-Ceraj V, Polz MF.  2004.  Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J. Bacteriol.. 186(9):2629-2635.
Acinas SG, Sarma-Rupavtarm R, Klepac-Ceraj V, Polz MF.  2005.  PCR-induced sequence artifacts and bias: Insights from comparison of two 16S rRNA clone libraries constructed from the same sample. Applied and Environmental Microbiology. 71(12):8966-8969.
Carrascal OMPérez, VanInsberghe D, Juárez S, Polz MF, Vinuesa P, González V.  2016.  Population Genomics of the Symbiotic Plasmids of Sympatric Nitrogen-Fixing Rhizobium Species Associated with Phaseolus vulgaris.. Environ Microbiol.
Cordero OX, Polz MF.  2014.  Explaining microbial genomic diversity in light of evolutionary ecology.. Nat Rev Microbiol. 12(4):263-73.
Cordero OX, Wildschutte H, Kirkup B, Proehl S, Ngo L, Hussain F, Le Roux F, Mincer T, Polz MF.  2012.  Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance.. Science. 337(6099):1228-31.
Cordero OX, Ventouras L-A, Delong EF, Polz MF.  2012.  Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations.. Proc Natl Acad Sci U S A.
Datta MS, Sliwerska E, Gore J, Polz MF, Cordero OX.  2016.  Microbial interactions lead to rapid micro-scale successions on model marine particles.. Nat Commun. 7:11965.
Fraser C, Alm EJ, Polz MF, Spratt BG, Hanage WP.  2009.  The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity. Science. 232(5915):741-746.
Ge Z, Feng Y, Taylor N, Ohtani M, Polz MF, Schauer DB, Fox JG.  2006.  Colonization of Altered Schaedler Flora is influenced by gender, aging and Helicobacter hepaticus infection in the intestine of Swiss Webster mice. Applied and Environmental Microbiology. 72(7):5100-5103.
Goudenège D, Labreuche Y, Krin E, Ansquer D, Mangenot S, Calteau A, Médigue C, Mazel D, Polz MF, Le Roux F.  2013.  Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits.. ISME J. 7(10):1985-96.
Hehemann J-H, Arevalo P, Datta MS, Yu X, Corzett CH, Henschel A, Preheim SP, Timberlake S, Alm EJ, Polz MF.  2016.  Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes.. Nat Commun. 7:12860.
Hullar M, Polz MF, Cavanaugh CM.  1999.  Bias associated with reverse transcription of 16S rRNAs from microbial communities. ASM, 99th General Meeting.
Hunt DE, Klepac-Ceraj V, Acinas SG, Gauthier C, Bertilsson S, Polz MF.  2006.  Evaluation of 23S rRNA PCR Primers for use in Phylogenetic Studies of Bacterial Diversity. Appl. Environ. Microbiol.. 72(3):2221-2225.
Hunt DE, David LD, Gevers D, Preheim SP, Alm EJ, Polz MF.  2008.  Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science. 320:1081-1085.
Hunt DE, Gevers D, Vahora NM, Polz MF.  2008.  Conservation of the chitin utilization pathway in the Vibrionaceae. Applied and Environmental Microbiology. 74(1):44-51.
Jagtap, iv SSadash, Hehemann J-H, Polz MF, Lee J-K, Zhao H.  2014.  Comparative biochemical characterization of three exolytic oligoalginate lyases from vibrio splendidus reveals complementary substrate scope, temperature, and pH adaptations.. Appl Environ Microbiol. 80(14):4207-14.
John SG, Mendez CB, Deng L, Poulos B, Kauffman A KM, Kern S, Brum J, Polz MF, Boyle EA, Sullivan MB.  2011.  A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environmental microbiology reports. 3(2):195-202.
Joss MJ, Koenig J, Labbate M, Polz MF, Gillings MR, Stokes HW, Doolittle WF, Boucher Y.  2009.  ACID: annotation of cassette and integron data. BMC Bioinformatics. 10:118.
Kirchberger PC, Orata FD, E Barlow J, Kauffman KM, Case RJ, Polz MF, Boucher Y.  2016.  A Small Number of Phylogenetically Distinct Clonal Complexes Dominate a Coastal Vibrio cholerae Population.. Appl Environ Microbiol. 82(18):5576-86.
Kirchberger PC, Turnsek M, Hunt DE, Haley BJ, Colwell RR, Polz MF, Tarr CL, Boucher Y.  2014.  Vibrio metoecus sp.nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens.. Int J Syst Evol Microbiol.
Kirkup BC, Chang L, Chang S, Gevers D, Polz MF.  2010.  Vibrio chromosomes share common history. BMC Microbiol.. 10:137.
Klepac-Ceraj V, Ceraj I, Polz MF.  2006.  CLUSTERER: extendable java application for sequence grouping and cluster analysis. Online J. Bioinf.. 7(1):15-21.
Klepac-Ceraj V, Bahr M, Crump BC, Teske AP, Hobbie JE, Polz MF.  2004.  High overall diversity and dominance of microdiverse relationships in salt marsh sulfate-reducing bacteria. Environ. Microbiol.. 6(7):686-698.
Klose J, Polz MF, Wagner M, Schimak MP, Gollner S, Bright M.  2015.  Endosymbionts escape dead hydrothermal vent tubeworms to enrich the free-living population.. Proc Natl Acad Sci U S A. 112(36):11300-5.
Kuai L, Nair AA, Polz MF.  2001.  A rapid and simple method for the MPN estimation of arsenic-reducing bacteria. Appl. Environ. Microbiol.. 67(7):3168-3173.
Man-Aharonovich D, Tzahor S, Kirkup BC, Yogev T, Berman-Frank I, Polz MF, Béjà O, Mandel-Gutfreund Y.  2009.  A supervised learning approach for taxonomic classification of core-photosystem-II genes and transcripts in the marine environment. BMC Genomics. 10:229.
Man-Aharonovich D, Philosof A, Kirkup BC, Le Gall F, Yogev T, Berman-Frank I, Polz MF, Vaulot D, Beja O.  2010.  Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. ISME Journal. 4:1044–1052.
Marcelino LA, Backman V, Donaldson A, Steadman C, Thompson JR, Pacocha-Preheim S, Lien C, Lim E, Veneziano D, Polz MF.  2006.  Accurate identification of low abundant targets amidst similar sequences by revealing hidden correlations oligonucleotide microarray data. Proc. Natl. Acad. Sci. U S A. 103(37):13629-13634.
Materna AC, Friedman J, Bauer C, David C, Chen S, Huang IB, Gillens A, Clarke SA, Polz MF, Alm EJ.  2012.  Shape and evolution of the fundamental niche in marine Vibrio.. ISME J.