Publications

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2016
Hehemann J-H, Arevalo P, Datta MS, Yu X, Corzett CH, Henschel A, Preheim SP, Timberlake S, Alm EJ, Polz MF.  2016.  Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes.. Nat Commun. 7:12860.
Bongrand C, Koch EJ, Moriano-Gutierrez S, Cordero OX, McFall-Ngai M, Polz MF, Ruby EG.  2016.  A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior.. ISME J.
Datta MS, Sliwerska E, Gore J, Polz MF, Cordero OX.  2016.  Microbial interactions lead to rapid micro-scale successions on model marine particles.. Nat Commun. 7:11965.
Le Roux F, K Wegner M, Polz MF.  2016.  Oysters and Vibrios as a Model for Disease Dynamics in Wild Animals.. Trends Microbiol. 24(7):568-80.
Carrascal OMPérez, VanInsberghe D, Juárez S, Polz MF, Vinuesa P, González V.  2016.  Population Genomics of the Symbiotic Plasmids of Sympatric Nitrogen-Fixing Rhizobium Species Associated with Phaseolus vulgaris.. Environ Microbiol.
Kirchberger PC, Orata FD, E Barlow J, Kauffman KM, Case RJ, Polz MF, Boucher Y.  2016.  A Small Number of Phylogenetically Distinct Clonal Complexes Dominate a Coastal Vibrio cholerae Population.. Appl Environ Microbiol. 82(18):5576-86.
2015
Xue H, Cordero OX, Camas FM, Trimble W, Meyer F, Guglielmini J, Rocha EPC, Polz MF.  2015.  Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations.. MBio. 6(3)
Klose J, Polz MF, Wagner M, Schimak MP, Gollner S, Bright M.  2015.  Endosymbionts escape dead hydrothermal vent tubeworms to enrich the free-living population.. Proc Natl Acad Sci U S A. 112(36):11300-5.
Thompson CC, Amaral GR, Campeão M, Edwards RA, Polz MF, Dutilh BE, Ussery DW, Sawabe T, Swings J, Thompson FL.  2015.  Microbial taxonomy in the post-genomic era: Rebuilding from scratch? Arch Microbiol. 197(3):359-70.
2013
Goudenège D, Labreuche Y, Krin E, Ansquer D, Mangenot S, Calteau A, Médigue C, Mazel D, Polz MF, Le Roux F.  2013.  Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits.. ISME J. 7(10):1985-96.
Polz MF, Alm EJ, Hanage WP.  2013.  Horizontal gene transfer and the evolution of bacterial and archaeal population structure.. Trends Genet.
Szabó G, Preheim SP, Kauffman KM, David LA, Shapiro J, Alm EJ, Polz MF.  2013.  Reproducibility of Vibrionaceae population structure in coastal bacterioplankton.. ISME J. 7(3):509-19.
2012
Cordero OX, Wildschutte H, Kirkup B, Proehl S, Ngo L, Hussain F, Le Roux F, Mincer T, Polz MF.  2012.  Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance.. Science. 337(6099):1228-31.
Xue H, Xu Y, Boucher Y, Polz MF.  2012.  High Frequency of a Novel Filamentous Phage, VCY{Phi}, within an Environmental Vibrio cholerae Population. Applied and environmental microbiology. 78(1):28-33.
Wollenberg MS, Preheim SP, Polz MF, Ruby EG.  2012.  Polyphyly of non-bioluminescent Vibrio fischeri sharing a lux-locus deletion. Environmental microbiology. 14(3):655-68.
Shapiro JB, Friedman J, Cordero OX, Preheim SP, Timberlake SC, Szabó G, Polz MF, Alm EJ.  2012.  Population genomics of early events in the ecological differentiation of bacteria.. Science. 336(6077):48-51.
Cordero OX, Ventouras L-A, Delong EF, Polz MF.  2012.  Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations.. Proc Natl Acad Sci U S A.
Szabo G, Preheim SP, Kauffman KM, David LA, Shapiro J, Alm EJ, Polz MF.  2012.  Reproducibility of Vibrionaceae population structure in coastal bacterioplankton.. ISME J.
Materna AC, Friedman J, Bauer C, David C, Chen S, Huang IB, Gillens A, Clarke SA, Polz MF, Alm EJ.  2012.  Shape and evolution of the fundamental niche in marine Vibrio.. ISME J.
2011
Wang L, Chen S, Vergin KL, Giovannoni SJ, Chan SW, DeMott MS, Taghizadeh K, Cordero OX, Cutler M, Timberlake S et al..  2011.  DNA phosphorothioation is widespread and quantized in bacterial genomes. Proceedings of the National Academy of Sciences of the United States of America. 108(7):2963-8.
Boucher Y, Cordero OX, Takemura A, Hunt DE, Schliep K, Bapteste E, Lopez P, Tarr CL, Polz MF.  2011.  Local mobile gene pools rapidly cross species boundaries to create endemicity within global Vibrio cholerae populations. mBio. 2(2)
Preheim SP, Timberlake S, Polz MF.  2011.  Merging taxonomy with ecological population prediction in a case study of vibrionaceae. Applied and environmental microbiology. 77(20):7195-206.
Preheim SP, Boucher Y, Wildschutte H, David LA, Veneziano D, Alm EJ, Polz MF.  2011.  Metapopulation structure of Vibrionaceae among coastal marine invertebrates. Environ. Microbiol.. 13(1):265-275.
John SG, Mendez CB, Deng L, Poulos B, Kauffman A KM, Kern S, Brum J, Polz MF, Boyle EA, Sullivan MB.  2011.  A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environmental microbiology reports. 3(2):195-202.
2010
Man-Aharonovich D, Philosof A, Kirkup BC, Le Gall F, Yogev T, Berman-Frank I, Polz MF, Vaulot D, Beja O.  2010.  Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. ISME Journal. 4:1044–1052.
Wildschutte H, Preheim SP, Hernandez Y, Polz MF.  2010.  O-antigen diversity and lateral transfer of the wbe region among Vibrio splendidus. Environ. Microbiol.. 12(11):2977-2987.
Kirkup BC, Chang L, Chang S, Gevers D, Polz MF.  2010.  Vibrio chromosomes share common history. BMC Microbiol.. 10:137.
2009
Joss MJ, Koenig J, Labbate M, Polz MF, Gillings MR, Stokes HW, Doolittle WF, Boucher Y.  2009.  ACID: annotation of cassette and integron data. BMC Bioinformatics. 10:118.
Fraser C, Alm EJ, Polz MF, Spratt BG, Hanage WP.  2009.  The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity. Science. 232(5915):741-746.
Le Roux F, Zouine M, Chakroun N, Binesse J, Saulnier D, Bouchier C, Zidane N, Ma L, Rusniok C, Lajus A et al..  2009.  Genome sequence of Vibrio splendidus: an abundant marine species with a large genotypic diversity. Environ. Microbiol.. 11(8):1959-1970.
Man-Aharonovich D, Tzahor S, Kirkup BC, Yogev T, Berman-Frank I, Polz MF, Béjà O, Mandel-Gutfreund Y.  2009.  A supervised learning approach for taxonomic classification of core-photosystem-II genes and transcripts in the marine environment. BMC Genomics. 10:229.
Tzahor S, Man-Aharonovich D, Kirkup BC, Yogev T, Berman-Frank I, Polz MF, Beja O, Mandel-Gutfreund Y.  2009.  A supervised learning approach for taxonomic classification of core-photosystem-II genes and transcripts in the marine environment. BMC Genomics. 10(229)
2008
Stewart JR, Gast RJ, Fujioka RS, Solo-Gabriele HM, Meschke JS, Amaral-Zettler LA, Del Castillo E, Polz MF, Collier TK, Strom MS et al..  2008.  The coastal environment and human health: Microbial indicators, pathogens, sentinels and reservoirs. Environ. Health. 7:S3Suppl.2.
Hunt DE, Gevers D, Vahora NM, Polz MF.  2008.  Conservation of the chitin utilization pathway in the Vibrionaceae. Applied and Environmental Microbiology. 74(1):44-51.

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