Publications
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2011. DNA phosphorothioation is widespread and quantized in bacterial genomes. Proceedings of the National Academy of Sciences of the United States of America. 108(7):2963-8.
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2011. High Frequency of a Novel Filamentous Phage, VCY{Phi}, within an Environmental Vibrio cholerae Population. Applied and environmental microbiology.
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2011. Local mobile gene pools rapidly cross species boundaries to create endemicity within global Vibrio cholerae populations. mBio. 2(2)
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2011. Merging taxonomy with ecological population prediction in a case study of vibrionaceae. Applied and environmental microbiology. 77(20):7195-206.
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2011. Metapopulation structure of Vibrionaceae among coastal marine invertebrates. Environ. Microbiol.. 13(1):265-275.
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2011. Polyphyly of non-bioluminescent Vibrio fischeri sharing a lux-locus deletion. Environmental microbiology.
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2011. A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environmental microbiology reports. 3(2):195-202.
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2010. Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. ISME Journal. 4:1044–1052.
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2010. O-antigen diversity and lateral transfer of the wbe region among Vibrio splendidus. Environ. Microbiol.. 12(11):2977-2987.
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2010. Vibrio chromosomes share common history. BMC Microbiol.. 10:137.
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2009. ACID: annotation of cassette and integron data. BMC Bioinformatics. 10:118.
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2009. The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity. Science. 232(5915):741-746.
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2009. Genome sequence of Vibrio splendidus: an abundant marine species with a large genotypic diversity. Environ. Microbiol.. 11(8):1959-1970.
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2008. The coastal environment and human health: Microbial indicators, pathogens, sentinels and reservoirs. Environ. Health. 7:S3Suppl.2.
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2008. Conservation of the chitin utilization pathway in the Vibrionaceae. Applied and Environmental Microbiology. 74(1):44-51.
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2008. Rapic chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches. Proc Natl Acad Sci U S A. 105(11):4209-4214.
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2008. Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science. 320:1081-1085.
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2007. Niche adaptation and spectral tuning in marine proteorhodopsins. ISME Journal. in press
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2006. Accurate identification of low abundant targets amidst similar sequences by revealing hidden correlations oligonucleotide microarray data. Proc. Natl. Acad. Sci. U S A. 103(37):13629-13634.
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2006. CLUSTERER: extendable java application for sequence grouping and cluster analysis. Online J. Bioinf.. 7(1):15-21.
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2006. Colonization of Altered Schaedler Flora is influenced by gender, aging and Helicobacter hepaticus infection in the intestine of Swiss Webster mice. Applied and Environmental Microbiology. 72(7):5100-5103.
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2006. Dynamics of Vibrio populations and their role in environmental nutrient cycling. The Biology of Vibrios. :190-203.
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2006. Evaluation of 23S rRNA PCR Primers for use in Phylogenetic Studies of Bacterial Diversity. Appl. Environ. Microbiol.. 72(3):2221-2225.
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2006. Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes. Phil. Trans. R. Soc. Lond. B. 361:2009-2021.
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2006. Symbiont community composition varies among members of a single host population of the wood-boring bivalve Lyrodus pedicellatus (Bivalvia: Teredinidae). Applied and Environmental Microbiology. 72(1):412-417.
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2005. Diversity, sources, and detection of human bacterial pathogens in the marine environment. Oceans and Health: Pathogens in the Marine Environment. :29-68.
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2005. Genotypic diversity within a natural coastal bacterioplankton population. Science. 307(5713):1311-1313.
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2005. PCR-induced sequence artifacts and bias: Insights from comparison of two 16S rRNA clone libraries constructed from the same sample. Applied and Environmental Microbiology. 71(12):8966-8969.
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2004. Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J. Bacteriol.. 186(9):2629-2635.
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2004. Diversity and dynamics of a North Atlantic coastal vibrio community. Appl. Environ. Microbiol.. 70(7):4103-4110.
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2004. Effects of temperature and salinity of Vibrio vulnificus population dynamics as assessed by quantitative PCR. Appl. Environ. Microbiol.. 70(9):5469-5476.
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2004. Fine-scale phylogenetic architecture of a complex bacterial community. Nature. 430:551-554.
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2004. High overall diversity and dominance of microdiverse relationships in salt marsh sulfate-reducing bacteria. Environ. Microbiol.. 6(7):686-698.
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2004. Spatial distribution and stability of the eight microbial species of the Altered Schaedler Flora in the mouse gastrointestinal tract. Appl. Environ. Microbiol.. 70(5):2791-2800.
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2003. A(r)Ray of hope in analysis of the function and diversity of microbial communities. Biol. Bull.. 204:196-199.
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2003. Defined flora mice as a model system for quantitatively studying the microecology of the mammalian gastrointesitnal tract. ASM General Meeting.
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2003. Seasonal poplation dynamics of Vibrio vulnificus in a coastal Atlantic bay assessed by quantitative PCR. ASM General Meeting.
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